{
  "schemaVersion": 1,
  "description": "Canonical MapleOmics species metadata and module availability.",
  "species": [
    {"code":"Atru","name":"Acer truncatum","shortName":"A. truncatum","group":"acer","collection":"focal","assemblySizeMb":604,"proteinCodingGenes":28214,"assemblyLevel":"Chromosome","nuclearAccession":"Figshare 10.6084/m9.figshare.12986237","chloroplastAccession":"NC_037211.1","mitochondrialAccession":"MZ318049.1","reference":"Ma et al., 2020, Plant Journal","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Apal","name":"Acer palmatum","shortName":"A. palmatum","group":"acer","collection":"focal","assemblySizeMb":712,"proteinCodingGenes":28559,"assemblyLevel":"Chromosome","nuclearAccession":null,"chloroplastAccession":"MK578668.1","mitochondrialAccession":null,"reference":"Chen et al., 2023, International Journal of Biological Macromolecules","dataAccess":"metadata","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Abue","name":"Acer buergerianum","shortName":"A. buergerianum","group":"acer","collection":"focal","assemblySizeMb":699,"proteinCodingGenes":30982,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":"NC_034744.1","mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Aele","name":"Acer elegantulum","shortName":"A. elegantulum","group":"acer","collection":"focal","assemblySizeMb":746,"proteinCodingGenes":31158,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":"NC_056210.1","mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Agri","name":"Acer griseum","shortName":"A. griseum","group":"acer","collection":"focal","assemblySizeMb":729,"proteinCodingGenes":33665,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":"NC_034346.1","mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Ahen","name":"Acer henryi","shortName":"A. henryi","group":"acer","collection":"focal","assemblySizeMb":519,"proteinCodingGenes":27376,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":"NC_049163.1","mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Aneg","name":"Acer negundo","shortName":"A. negundo","group":"acer","collection":"focal","assemblySizeMb":428,"proteinCodingGenes":29291,"assemblyLevel":"Chromosome","nuclearAccession":"GCA_035582765.1","chloroplastAccession":"NC_051957.1","mitochondrialAccession":null,"reference":"McEvoy et al., 2022, Plant Journal","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Apen","name":"Acer pentaphyllum","shortName":"A. pentaphyllum","group":"acer","collection":"focal","assemblySizeMb":618,"proteinCodingGenes":30123,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":"NC_049167.1","mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Ateg","name":"Acer tegmentosum","shortName":"A. tegmentosum","group":"acer","collection":"focal","assemblySizeMb":1022,"proteinCodingGenes":34965,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":"NC_056233.1","mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Ayan","name":"Acer yangbiense","shortName":"A. yangbiense","group":"acer","collection":"focal","assemblySizeMb":644,"proteinCodingGenes":28307,"assemblyLevel":"Scaffold","nuclearAccession":"GCA_008009225.1","chloroplastAccession":"NC_050351.1","mitochondrialAccession":"NC_059858.1","reference":"Yang et al., 2019, GigaScience","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Apse","name":"Acer pseudosieboldianum","shortName":"A. pseudosieboldianum","group":"acer","collection":"focal","assemblySizeMb":665,"proteinCodingGenes":29679,"assemblyLevel":"Scaffold","nuclearAccession":"GWHBECT00000000","chloroplastAccession":"NC_046487.1","mitochondrialAccession":null,"reference":"Li et al., 2022, Frontiers in Plant Science","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Dipdye","name":"Dipteronia dyeriana","shortName":"D. dyeriana","group":"dip","collection":"focal","assemblySizeMb":873,"proteinCodingGenes":32825,"assemblyLevel":"Chromosome","nuclearAccession":"GCA_032871835.1","chloroplastAccession":"NC_031899.1","mitochondrialAccession":null,"reference":"Feng et al., 2023, Plant Journal","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Dipsin","name":"Dipteronia sinensis","shortName":"D. sinensis","group":"dip","collection":"focal","assemblySizeMb":679,"proteinCodingGenes":33257,"assemblyLevel":"Chromosome","nuclearAccession":"GCA_033220585.1","chloroplastAccession":"NC_029338.1","mitochondrialAccession":null,"reference":"Feng et al., 2023, Plant Journal","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":true,"expression":true,"blast":true}},
    {"code":"Arubr","name":"Acer rubrum","shortName":"A. rubrum","group":"acer","collection":"supplemental","assemblySizeMb":1690,"proteinCodingGenes":64644,"assemblyLevel":"Chromosome","nuclearAccession":null,"chloroplastAccession":null,"mitochondrialAccession":null,"reference":"Lu et al., 2022, Plant Physiology and Biochemistry","dataAccess":"metadata","capabilities":{"search":true,"orthology":false,"synteny":false,"expression":false,"blast":false}},
    {"code":"Apaxi","name":"Acer paxii","shortName":"A. paxii","group":"acer","collection":"supplemental","assemblySizeMb":714,"proteinCodingGenes":30041,"assemblyLevel":"Scaffold","nuclearAccession":null,"chloroplastAccession":null,"mitochondrialAccession":null,"reference":"This study; manuscript in preparation","dataAccess":"restricted","capabilities":{"search":true,"orthology":false,"synteny":false,"expression":false,"blast":false}},
    {"code":"Citsin","name":"Citrus sinensis","shortName":"C. sinensis","group":"outgroup","collection":"outgroup","assemblySizeMb":null,"proteinCodingGenes":24414,"assemblyLevel":"Chromosome","nuclearAccession":"GCF_000317415.1","chloroplastAccession":"NC_008334.1","mitochondrialAccession":"NC_037463.1","reference":"Xu et al., 2013, Nature Genetics","dataAccess":"public","capabilities":{"search":true,"orthology":true,"synteny":false,"expression":false,"blast":true}}
  ]
}
