3
Seasons (Spring · Summer · Autumn)
9
ATAC-seq Samples (3 replicates/season)
9
WGBS Samples (3 replicates/season)
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Total ATAC Peaks (avg across samples)
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Average Global Methylation (%)
Peak Count per Sample
Number of accessible chromatin peaks called per sample (MACS2)
Seasonal Average Peak Count
Mean peaks across 3 biological replicates per season
Sample Details
| Sample ID | Season | Replicate | Peak Count | Total Peak bp | Avg Peak Width | BigWig (MB) |
|---|
Method: ATAC-seq libraries prepared from A. palmatum leaf nuclei.
Peaks called using MACS2 with default parameters. Chromatin accessibility increases significantly from spring to autumn,
consistent with active chromatin remodeling during seasonal color change.
Global Methylation per Sample (%)
Percentage of methylated CpG sites across the genome
Seasonal Average Methylation (%)
Mean global methylation across 3 biological replicates per season
Sample Details
| Sample ID | Season | Replicate | CpG Sites | Global Meth (%) | Methylated Reads | BigWig (MB) |
|---|
Method: Whole-genome bisulfite sequencing (WGBS) of A. palmatum leaf tissue.
Bismark used for alignment and methylation calling. Global CpG methylation remains relatively stable (~73–75%) across seasons,
while locus-specific changes may underlie seasonal gene regulation.
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27 epigenome tracks available